SparkRMA
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Contents:

  • Getting Started with SparkRMA
  • Overview
  • Walkthrough an Example
  • Walkthrough: Annotation and Background Correction
  • Walkthrough: Quantile Normalization and Summarization via Median Polish
  • spark_rma
SparkRMA
  • Docs »
  • Welcome to SparkRMA’s documentation!
  • Edit on GitHub

Welcome to SparkRMA’s documentation!¶

Contents:

  • Getting Started with SparkRMA
    • Background
    • Requirements
    • Installation
    • AWS
  • Overview
    • Annotation and Background Correction
    • Quantile Normalization
    • Summarization via Median Polish
  • Walkthrough an Example
    • Data
    • CfnCluster
    • EMR
  • Walkthrough: Annotation and Background Correction
    • Configure and Start CfnCluster
    • Setup Software on the Grid Engine Cluster
    • Download Data and SparkRMA
    • Annotation, Background Correction, and Conversion to Parquet
    • Move to S3
  • Walkthrough: Quantile Normalization and Summarization via Median Polish
    • Start EMR
    • Copy Data into HDFS
    • Download SparkRMA
    • Quantile Normalization
    • Median Polish
    • Move Results to S3
  • spark_rma
    • spark_rma package
    • helper package

Indices and tables¶

  • Index
  • Module Index
  • Search Page
Next

© Copyright 2018, Eli Lilly and Company. Revision 72a68a45.

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