Welcome to SparkRMA’s documentation!

Contents:

• Getting Started with SparkRMA
  • Background
  • Requirements
  • Installation
  • AWS
• Overview
  • Annotation and Background Correction
  • Quantile Normalization
  • Summarization via Median Polish
• Walkthrough an Example
  • Data
  • CfnCluster
  • EMR
• Walkthrough: Annotation and Background Correction
  • Configure and Start CfnCluster
  • Setup Software on the Grid Engine Cluster
  • Download Data and SparkRMA
  • Annotation, Background Correction, and Conversion to Parquet
  • Move to S3
• Walkthrough: Quantile Normalization and Summarization via Median Polish
  • Start EMR
  • Copy Data into HDFS
  • Download SparkRMA
  • Quantile Normalization
  • Median Polish
  • Move Results to S3

• spark_rma
  • spark_rma package
  • helper package

Indices and tables

• Index
• Module Index
• Search Page