SparkRMA
latest
Contents:
Getting Started with SparkRMA
Overview
Walkthrough an Example
Walkthrough: Annotation and Background Correction
Walkthrough: Quantile Normalization and Summarization via Median Polish
spark_rma
SparkRMA
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Welcome to SparkRMA’s documentation!
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Welcome to SparkRMA’s documentation!
¶
Contents:
Getting Started with SparkRMA
Background
Requirements
Installation
AWS
Overview
Annotation and Background Correction
Quantile Normalization
Summarization via Median Polish
Walkthrough an Example
Data
CfnCluster
EMR
Walkthrough: Annotation and Background Correction
Configure and Start CfnCluster
Setup Software on the Grid Engine Cluster
Download Data and SparkRMA
Annotation, Background Correction, and Conversion to Parquet
Move to S3
Walkthrough: Quantile Normalization and Summarization via Median Polish
Start EMR
Copy Data into HDFS
Download SparkRMA
Quantile Normalization
Median Polish
Move Results to S3
spark_rma
spark_rma package
helper package
Indices and tables
¶
Index
Module Index
Search Page
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